Keith E. Shearwin: search on Z-Library

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1

Revisited gene regulation in bacteriophage λ

Ian B Dodd, Keith E Shearwin, J Barry Egan

Journal:

Current Opinion in Genetics & Development

Year:

2005

Language:

english

File:

PDF, 240 KB

english, 2005

2

Linkage between ligand binding and control of tubulin conformation

Shearwin, Keith E., Timasheff, Serge N.

Journal:

Year:

1992

Language:

english

File:

PDF, 2.37 MB

english, 1992

3

Functional Alignment of Regulatory Networks: A Study of Temperate Phages

Trusina, Ala, Sneppen, Kim, Dodd, Ian B., Shearwin, Keith E., Egan, J. Barry

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 526 KB

english, 2005

4

Aspects of protein–DNA interactions: a review of quantitative thermodynamic theory for modelling synthetic circuits utilising LacI and CI repressors, IPTG and the reporter genelacZ

Munro, Peter D., Ackers, Gary K., Shearwin, Keith E.

Journal:

Biophysical Reviews

Year:

2016

Language:

english

File:

PDF, 1020 KB

english, 2016

5

Purification of bacteriophage lambda repressor

Gao, Ning, Shearwin, Keith, Mack, John, Finzi, Laura, Dunlap, David

Journal:

Protein Expression and Purification

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

6

Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors

Palmer, Adam C., Egan, J. Barry, Shearwin, Keith E.

Journal:

Year:

2011

Language:

english

File:

PDF, 1018 KB

english, 2011

7

Effects of thermodynamic nonideality on the kinetics of ester hydrolysis by α-chymotrypsin: A model system with preexistence of the isomerization equilibrium

Douglas A. Bergman, Keith E. Shearwin, Donald J. Winzor

Journal:

Archives of Biochemistry and Biophysics

Year:

1989

Language:

english

File:

PDF, 870 KB

english, 1989

8

In Silico, In Vitro, and In Vivo Estimation of J-Factors for LAC Repressor-Mediated DNA Loop Formation

Kumar, Sandip, Priest, David, Biton, Yoav, Swigon, David, Shearwin, Keith, Dodd, Ian, Dunlap, David

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 50 KB

english, 2013

9

Transcriptional Interference between Convergent Promoters Caused by Elongation over the Promoter

Benjamin P Callen, Keith E Shearwin, J.Barry Egan

Journal:

Year:

2004

Language:

english

File:

PDF, 399 KB

english, 2004

10

A quantitative binding model for the Apl protein, the dual purpose recombination-directionality factor and lysis-lysogeny regulator of bacteriophage 186

Cutts, Erin E, BarryÂ Egan, J, Dodd, Ian B, Shearwin, Keith E

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 2.40 MB

2020

11

Transcriptional interference – a crash course

Keith E. Shearwin, Benjamin P. Callen, J. Barry Egan

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 184 KB

english, 2005

12

Thermodynamic nonideality in macromolecular solutions : Evaluation of parameters for the prediction of covolume effects

Keith E. SHEARWIN, Donald J. WINZOR

Journal:

Year:

1990

Language:

english

File:

PDF, 737 KB

english, 1990

13

A Mathematical Model for Transcriptional Interference by RNA Polymerase Traffic in Escherichia coli

Kim Sneppen, Ian B. Dodd, Keith E. Shearwin, Adam C. Palmer, Rachel A. Schubert, Benjamin P. Callen, J. Barry Egan

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 273 KB

english, 2005

14

Potent Transcriptional Interference by Pausing of RNA Polymerases over a Downstream Promoter

Adam C. Palmer, Alexandra Ahlgren-Berg, J. Barry Egan, Ian B. Dodd, Keith E. Shearwin

Journal:

Year:

2009

Language:

english

File:

PDF, 1.20 MB

english, 2009

15

Programmable DNA looping using engineered bivalent dCas9 complexes

Hao, Nan, Shearwin, Keith E., Dodd, Ian B.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

16

Allowance for thermodynamic nonideality and Donnan effects in binding studies: Activity coefficients of charged ligands in the presence of albumin

Keith E. Shearwin, Donald J. Winzor

Journal:

Biophysical Chemistry

Year:

1990

Language:

english

File:

PDF, 828 KB

english, 1990

17

Slow growth leads to a switch

Shearwin, Keith

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 492 KB

english, 2009

18

The Structural Basis of Cooperative Regulation at an Alternate Genetic Switch

Heather W. Pinkett, Keith E. Shearwin, Steven Stayrook, Ian B. Dodd, Tom Burr, Ann Hochschild, J. Barry Egan, Mitchell Lewis

Journal:

Year:

2006

Language:

english

File:

PDF, 663 KB

english, 2006

19

Effect of calcium ion on the dimerization of α-chymotrypsin

Keith E. Shearwin, Donald J. Winzor

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1990

Language:

english

File:

PDF, 217 KB

english, 1990

20

One-Step Cloning and Chromosomal Integration of DNA

St-Pierre, François, Cui, Lun, Priest, David G., Endy, Drew, Dodd, Ian B., Shearwin, Keith E.

Journal:

ACS Synthetic Biology

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

21

The 186 Bacteriophage Repressor as a Model System to Study Nucleosome Repositioning by Single Molecule Microscopy

Wang, Haowei, Dodd, Ian, Shearwin, Keith, Dunlap, David, Finzi, Laura

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

22

Instability of CII is needed for efficient switching between lytic and lysogenic development in bacteriophage 186

Murchland, Iain M, Ahlgren-Berg, Alexandra, Pietsch, Julian M J, Isabel, Alejandra, Dodd, IanÂ B, Shearwin, Keith E

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.09 MB

2020

23

Long-Range DNA Looping in the Lambda Genetic Switch

Shearwin, Keith, Cui, Lun, Murchland, Iain, Dodd, Ian B.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

24

Estimation of DNA Loop Interactions Supports the Loop Domain Model of Insulator Action

Kumar, Sandip, Priest, David G., Yan, Yan, Dodd, Ian B., Shearwin, Keith E., Dunlap, David D.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

25

The role of repressor kinetics in relief of transcriptional interference between convergent promoters

Hao, Nan, Palmer, Adam C., Ahlgren-Berg, Alexandra, Shearwin, Keith E., Dodd, Ian B.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 963 KB

english, 2016

26

The CII protein of bacteriophage 186 establishes lysogeny by activating a promoter upstream of the lysogenic promoter

Petra J. Neufing, Keith E. Shearwin, Julianne Camerotto, J. Barry Egan

Journal:

Molecular Microbiology

Year:

1996

Language:

english

File:

PDF, 798 KB

english, 1996

27

Coliphage 186 Genetic Switch: A Single Molecule Study

Wang, Haowei, Dodd, Ian B, Shearwin, Keith, Dunlap, David, Finzi, Laura

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 38 KB

english, 2010

28

Quantitation of interactions between two DNA loops demonstrates loop domain insulation in E. coli cells

Priest, David G., Kumar, Sandip, Yan, Yan, Dunlap, David D., Dodd, Ian B., Shearwin, Keith E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 2.06 MB

english, 2014

29

RNA polymerase pausing at a protein roadblock can enhance transcriptional interference by promoter occlusion

Hao, Nan, Crooks, Michael T., Palmer, Adam C., Dodd, Ian B., Shearwin, Keith E.

Journal:

Year:

2019

Language:

english

File:

PDF, 680 KB

english, 2019

30

Automated DNA Tracing on AFM Images Helps the Study of 186 Repressor-DNA Interactions

Wang, Haowei, Dodd, Ian B., Keith, Shearwin, Dunlap, David, Finzi, Laura

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 93 KB

english, 2012

31

Substrate as a source of thermodynamic nonideality in enzyme kinetic studies: Invertase-catalyzed hydrolysis of sucrose

Keith E. Shearwin, Donald J. Winzor

Journal:

Archives of Biochemistry and Biophysics

Year:

1988

Language:

english

File:

PDF, 793 KB

english, 1988

32

Effect of colchicine analogs on the dissociation of .alpha..beta. tubulin into subunits: The locus of colchicine binding

Shearwin, Keith E., Timasheff, Serge N.

Journal:

Year:

1994

Language:

english

File:

PDF, 989 KB

english, 1994

33

Native mass spectrometry identifies an alternative DNA-binding pathway for BirA from Staphylococcus aureus

Satiaputra, Jiulia, Sternicki, Louise M., Hayes, Andrew J., Pukala, Tara L., Booker, Grant W., Shearwin, Keith E., Polyak, Steven W.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 7.64 MB

2019

34

The Colchicine-Induced GTPase Activity of Tubulin: State of the Product. Activation by Microtubule-Promoting Cosolvents

Perez-Ramirez, Bernardo, Shearwin, Keith E., Timasheff, Serge N.

Journal:

Year:

1994

Language:

english

File:

PDF, 1.65 MB

english, 1994

35

Bacteriophage lambda repressor mediates the formation of a complex enhancer-like structure

Cui, Lun, Murchland, Iain, Dodd, Ian B, Shearwin, Keith E

Journal:

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

36

Biotin-mediated growth and gene expression in Staphylococcus aureus is highly responsive to environmental biotin

Satiaputra, Jiulia, Eijkelkamp, Bart A., McDevitt, Christopher A., Shearwin, Keith E., Booker, Grant W., Polyak, Steven W.

Journal:

Applied Microbiology and Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

37

Advanced Resistance Studies Identify Two Discrete Mechanisms in Staphylococcus aureus to Overcome Antibacterial Compounds that Target Biotin Protein Ligase

Hayes, Andrew J., Satiaputra, Jiulia, Sternicki, Louise M., Paparella, Ashleigh S., Feng, Zikai, Lee, Kwang J., Blanco-Rodriguez, Beatriz, Tieu, William, Eijkelkamp, Bart A., Shearwin, Keith E., Pukal

Journal:

Year:

2020

File:

PDF, 900 KB

2020

38

The dual role of Apl in prophage induction of coliphage 186

Michael R. Reed, Keith E. Shearwin, Linda M. Pell, J. Barry Egan

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 1.17 MB

english, 1997

39

Thermodynamic nonideality as a probe of reversible protein unfolding effected by variations in pH and temperature: Studies of ribonuclease

Keith E. Shearwin, Donald J. Winzor

Journal:

Archives of Biochemistry and Biophysics

Year:

1990

Language:

english

File:

PDF, 639 KB

english, 1990

40

Linkages between the dissociation of .alpha..beta. tubulin into subunits and ligand binding: The ground state of tubulin is the GDP conformation

Shearwin, Keith E., Timasheff, Serge N., Perez-Ramirez, Bernardo

Journal:

Year:

1994

Language:

english

File:

PDF, 1.14 MB

english, 1994

41

Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements

Hao, Nan, Sneppen, Kim, Shearwin, Keith E., Dodd, Ian B.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 446 KB

english, 2017

42

Modelling Transcriptional Interference and DNA Looping in Gene Regulation

Ian B. Dodd, Keith E. Shearwin, Kim Sneppen

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

43

Hidden Secrets of Sigma54 Promoters Revealed

Hao, Nan, Shearwin, Keith E.

Journal:

Trends in Biochemical Sciences

Year:

2017

Language:

english

File:

PDF, 314 KB

english, 2017

44

Repurposing site-specific recombinases for synthetic biology

Cui, Lun, St-Pierre, François, Shearwin, Keith

Journal:

Future Microbiology

Year:

2013

Language:

english

File:

PDF, 442 KB

english, 2013

45

Directing traffic on DNA – How transcription factors relieve or induce transcriptional interference

Hao, Nan, Palmer, Adam C., Dodd, Ian B., Shearwin, Keith E.

Journal:

Year:

2017

Language:

english

File:

PDF, 755 KB

english, 2017

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